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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4367746_4368582_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4367746 - 4368582
Intron Length:
837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TAATTCTTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TAATTCTTAACA
Flanking Amino Acid:
NDNLLREGAAHAFAQYNMDQ
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
74.7
0.56
1
70.2
39.6
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
80.7
0.96
1
81.39
33.2

Associated Gene:

Gene:
CAPZA1
Ensembl Gene ID:
ENSAPLG00000015264
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022099
4363703 - 4369329
5627