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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4378940_4379589_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4378940 - 4379589
Intron Length:
650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAACT
5'SS Class:
major
3'SS Sequence:
TCTCCCACTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TCTTACTGAACT
Flanking Amino Acid:
LIFSEGQSIADTRG*LGRSP
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
72.7
36.1
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
65.4
0.35
1
65.1
29.4
Minor 5ss
42.3
-0.9
2.8
59.4
44.8
Minor BPS
70
0.71
1.6
86.18
39.4

Associated Gene:

Gene:
ST7L
Ensembl Gene ID:
ENSAPLG00000014708
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015394
4370786 - 4396585
25800