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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4379706_4381254_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4379706 - 4381254
Intron Length:
1549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAGTG
5'SS Class:
major
3'SS Sequence:
GTTTTTGCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CAGTCTTTAAAT
Flanking Amino Acid:
TQMPSGLQIQ*CRKHGERET
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.2
61
44.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
74.4
0.55
1
70
40.3
Minor 5ss
38.5
-1.3
3.6
55.8
48.4
Minor BPS
66.5
0.6
1.4
74.11
42.7

Associated Gene:

Gene:
ST7L
Ensembl Gene ID:
ENSAPLG00000014708
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015394
4370786 - 4396585
25800