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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4381334_4381971_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4381334 - 4381971
Intron Length:
638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
TTCCTTATTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TTTTCCTTATTA
Flanking Amino Acid:
LRIRL*S*TMIVPLHMFF*Q
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.8
33.2
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
85.5
0.8
0.8
80.3
30.3
Minor 5ss
45
-0.5
2.8
54.7
43.6
Minor BPS
78.9
0.9
1.4
87.27
31.2

Associated Gene:

Gene:
ST7L
Ensembl Gene ID:
ENSAPLG00000014708
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015394
4370786 - 4396585
25800