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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4382733_4383375_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4382733 - 4383375
Intron Length:
643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TACTCATTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTTCTCTGTACT
Flanking Amino Acid:
EYEKQSK**EI**KSFHFSA
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
82.6
29.4
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
79.8
0.67
0.9
73.5
35.6
Minor 5ss
35.4
-1.7
2.9
48.5
40.3
Minor BPS
59.2
0.37
1.8
82.32
38.4

Associated Gene:

Gene:
ST7L
Ensembl Gene ID:
ENSAPLG00000014708
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015394
4370786 - 4396585
25800