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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4389576_4392310_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4389576 - 4392310
Intron Length:
2735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATATTCTTATTT
Flanking Amino Acid:
QKQQTENCCQHFTKSPFTHR
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
79
35.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
94
0.99
0.5
92.6
17.2
Minor 5ss
36.1
-1.6
3.3
49.5
41.2
Minor BPS
65.5
0.56
1.5
78.74
37.7

Associated Gene:

Gene:
ST7L
Ensembl Gene ID:
ENSAPLG00000014708
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015394
4370786 - 4396585
25800