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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4392451_4396513_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4392451 - 4396513
Intron Length:
4063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TGCTTCTGCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
CCGTCCTAACGT
Flanking Amino Acid:
FLS*WSFLLKLCCE*FGP*V
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
84.2
33.6
Major BPS
72
0.55
1
71.8
31.4
Major PPT
68
0.41
0.9
61.5
40
Minor 5ss
44.6
-0.6
2.9
70.4
39.5
Minor BPS
44.4
-0.3
2.2
58.45
50.5

Associated Gene:

Gene:
ST7L
Ensembl Gene ID:
ENSAPLG00000014708
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015394
4370786 - 4396585
25800