About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4410195_4420895_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4410195 - 4420895
Intron Length:
10701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
AAGGTGCTAACA
Flanking Amino Acid:
ALPPRTDSSWWYIGALGARV
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.8
77.5
30.7
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
79.6
0.67
0.8
73.5
31.5
Minor 5ss
31.9
-2.1
3.3
40.3
40.2
Minor BPS
41.7
-0.6
2.3
50.85
40.7

Associated Gene:

Gene:
WNT2B
Ensembl Gene ID:
ENSAPLG00000014558
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015190
4406106 - 4421059
14954