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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4463411_4471387_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4463411 - 4471387
Intron Length:
7977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTATCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATCT
Flanking Amino Acid:
ARDLVIEALKAQRRDTFIEE
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
80.5
35
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.4
0.75
0.8
81.9
34
Minor 5ss
48
-0.2
2.5
67.3
43.8
Minor BPS
65.8
0.57
1.6
83.94
37.1

Associated Gene:

Gene:
CTTNBP2NL
Ensembl Gene ID:
ENSAPLG00000020349
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033392
4456072 - 4491769
35698