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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4471496_4491691_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4471496 - 4491691
Intron Length:
20196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
GCCTAATAAACC
Flanking Amino Acid:
RSTLVWTAKKAFRMNLEKLS
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
86.2
0.81
0.7
84.1
30.5
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
44.7
-0.4
2
53.02
44.1

Associated Gene:

Gene:
CTTNBP2NL
Ensembl Gene ID:
ENSAPLG00000020349
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033392
4456072 - 4491769
35698