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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4529809_4532436_R

Intron Information:

Intron Rank:
138732
Intron Class:
major
Intron Phase:
Intron Coordinates:
4529809 - 4532436
Intron Length:
2628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCCAAA
5'SS Class:
major
3'SS Sequence:
TTTCCATTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTCCATTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.2
65.2
42.4
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
76.7
0.6
1
72.8
36.5
Minor 5ss
43.2
-0.7
3
57.3
47
Minor BPS
69.9
0.62
1.6
81.81
32.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022153
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026009
4527699 - 4534471
6773