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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4532546_4533048_R

Intron Information:

Intron Rank:
138733
Intron Class:
major
Intron Phase:
Intron Coordinates:
4532546 - 4533048
Intron Length:
503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTCCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
CTTATTTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.1
37.7
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
83.5
0.75
0.8
77.6
31.1
Minor 5ss
38.5
-1.3
3
48.8
47.4
Minor BPS
66.2
0.59
1.3
78.82
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022153
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026009
4527699 - 4534471
6773