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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4537847_4569128_R

Intron Information:

Intron Rank:
151295
Intron Class:
major
Intron Phase:
Intron Coordinates:
4537847 - 4569128
Intron Length:
31282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCATTCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TGCACCTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
72.3
39.7
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
73.5
0.53
0.9
66.6
39.1
Minor 5ss
40.4
-1.1
3.3
55.5
48.6
Minor BPS
59.7
0.39
1.7
73.58
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028924
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024305
4535014 - 4569275
34262