Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4560148_4569128_R

Intron Information:

Intron Rank:

151293

Intron Class:

major

Intron Phase:

Intron Coordinates:

4560148 - 4569128

Intron Length:

8981

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATGTTG

5'SS Class:

strong_major

3'SS Sequence:

GTGGGCTTCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

TTGCTTTTGAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.2

0.71

72.3

39.7

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

65.2

0.34

56.9

43.4

Minor 5ss

40.4

-1.1

3.3

55.5

48.6

Minor BPS

56.8

0.3

1.4

72.75

38.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028924

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020694

4559458 - 4569315

9858