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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4676385_4690102_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4676385 - 4690102
Intron Length:
13718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCGA
5'SS Class:
strong_major
3'SS Sequence:
GTCTCCTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTAAAT
U12 Branch Point Sequence:
GTCTCCTTCACA
Flanking Amino Acid:
QRADKRRAQKKARLARIRVA
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
68.9
43.8
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
77.9
0.63
0.8
71.7
32.8
Minor 5ss
37.2
-1.4
3
48
47.5
Minor BPS
69
0.59
1.8
75.93
41.5

Associated Gene:

Gene:
KCND3
Ensembl Gene ID:
ENSAPLG00000013982
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014601
4598415 - 4702521
104107