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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4690205_4696480_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4690205 - 4696480
Intron Length:
6276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGACTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTTTTCTGACTC
Flanking Amino Acid:
GLLNEALELTGSTEDEQHMT
Intron Amino Acid Position:
459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
71.5
33.9
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
75.4
0.57
0.9
67.3
39.1
Minor 5ss
28
-2.5
3
33.3
41.7
Minor BPS
60.5
0.31
1.7
74.51
36.5

Associated Gene:

Gene:
KCND3
Ensembl Gene ID:
ENSAPLG00000013982
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014601
4598415 - 4702521
104107