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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4699346_4700295_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4699346 - 4700295
Intron Length:
950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCCT
5'SS Class:
major
3'SS Sequence:
TTTCCCCTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAGTAAC
U12 Branch Point Sequence:
TGTTCTTTCCCC
Flanking Amino Acid:
LLSVRTSTIKNHEFIDEQLF
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
69.9
40.2
Major BPS
49.6
-0
1.3
53.3
40.4
Major PPT
76.2
0.59
0.9
69.8
36.6
Minor 5ss
43
-0.8
2.8
60.4
43.9
Minor BPS
44
-0.4
3.6
70.5
41.3

Associated Gene:

Gene:
KCND3
Ensembl Gene ID:
ENSAPLG00000013982
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014601
4598415 - 4702521
104107