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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4700544_4702316_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4700544 - 4702316
Intron Length:
1773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTAA
5'SS Class:
major
3'SS Sequence:
CTCTGTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACACCACTAACT
Flanking Amino Acid:
QCSEQPSLTTSRSSLNMKSD
Intron Amino Acid Position:
591

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.4
36.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84
0.77
0.8
75.9
38
Minor 5ss
34.3
-1.8
3.5
46.3
49
Minor BPS
48.7
-0
1.9
67.35
42.4

Associated Gene:

Gene:
KCND3
Ensembl Gene ID:
ENSAPLG00000013982
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014601
4598415 - 4702521
104107