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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4712610_4712695_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4712610 - 4712695
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAAAGCA
5'SS Class:
major
3'SS Sequence:
TTATGTATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTTTGTTATGT
Flanking Amino Acid:
MHRIGRAGRFGTLGLSVTYC
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
63.8
34.2
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
80.1
0.68
0.9
74.2
40
Minor 5ss
30.2
-2.3
3.4
36.2
42.7
Minor BPS
48.9
-0
2.5
78.81
43.9

Associated Gene:

Gene:
DDX20
Ensembl Gene ID:
ENSAPLG00000013826
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014420
4710691 - 4716942
6252