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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4713592_4714248_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4713592 - 4714248
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTCTAACT
Flanking Amino Acid:
SRGFPAECISGSMNQNQRLD
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.6
40.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.7
0.69
0.8
73.6
37
Minor 5ss
38.2
-1.3
3
48.7
47
Minor BPS
64.5
0.53
1.7
84.97
35.2

Associated Gene:

Gene:
DDX20
Ensembl Gene ID:
ENSAPLG00000013826
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014420
4710691 - 4716942
6252