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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4714806_4715063_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4714806 - 4715063
Intron Length:
258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGCCAT
5'SS Class:
major
3'SS Sequence:
GTTTCATGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AAATTTTCATCT
Flanking Amino Acid:
RLNPTDLSLIGLKQYYKIVN
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
66.7
40.4
Major BPS
100
1.24
0.5
100
0
Major PPT
76.6
0.6
1
73.9
40.7
Minor 5ss
34.2
-1.8
3.2
44.3
44.6
Minor BPS
48.2
-0
1.7
64.34
40

Associated Gene:

Gene:
DDX20
Ensembl Gene ID:
ENSAPLG00000013826
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014420
4710691 - 4716942
6252