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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4715207_4715288_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4715207 - 4715288
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTCATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTCAT
U12 Branch Point Sequence:
TGTTTTTTAGTC
Flanking Amino Acid:
LEEGSFQEQINWIYSSLPDN
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.7
27.9
Major BPS
77
0.67
1.1
77.7
37.1
Major PPT
84.4
0.77
0.6
80.6
24.7
Minor 5ss
34.5
-1.8
3
40.8
39.4
Minor BPS
61.9
0.35
1.5
70.24
35.6

Associated Gene:

Gene:
DDX20
Ensembl Gene ID:
ENSAPLG00000013826
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014420
4710691 - 4716942
6252