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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4732688_4734142_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4732688 - 4734142
Intron Length:
1455

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAA|GCAGAGGTT
5'SS Class:
major
3'SS Sequence:
CTCTGCTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCCGAG
U12 Branch Point Sequence:
CCGGTCCGAGCC
Flanking Amino Acid:
IICISAETLTCCLFLPP
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.9
0.33
1.2
72.4
33.9
Major BPS
40.9
-0.5
1.7
37.9
43.6
Major PPT
73.8
0.54
0.8
65
36.4
Minor 5ss
24.5
-2.9
4.7
44.9
45
Minor BPS
37.2
-0.9
1.8
38.74
40.2

Associated Gene:

Gene:
INKA2
Ensembl Gene ID:
ENSAPLG00000013825
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014393
4732667 - 4735156
2490