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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4733426_4734175_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4733426 - 4734175
Intron Length:
750

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TTA|GCAGCTCTG
5'SS Class:
weak_major
3'SS Sequence:
TCTTCCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
AGACACTGACCT
Flanking Amino Acid:
QQSKREEGNLLSMKEVGDGL
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.2
0.03
1.3
53.4
43.5
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
79.1
0.65
0.7
73.6
24.6
Minor 5ss
33.5
-1.9
4.3
50.3
41.7
Minor BPS
44.9
-0.3
1.8
60.26
42.1

Associated Gene:

Gene:
INKA2
Ensembl Gene ID:
ENSAPLG00000013825
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033086
4733369 - 4735156
1788