About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4734453_4734563_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4734453 - 4734563
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GCG|GCCACCTTG
5'SS Class:
weak_major
3'SS Sequence:
CCAGCCAGAGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CACACAA
U12 Branch Point Sequence:
TCCCACACAAAG
Flanking Amino Acid:
LAHPTVLPESEHVHPRTFEP
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.7
0.07
1.4
47.5
48.2
Major BPS
49.3
-0
0.9
56.6
29.3
Major PPT
50.2
0
1
44
36
Minor 5ss
38.6
-1.3
4.1
56.7
47.5
Minor BPS
38.8
-0.9
1.9
40.67
42.6

Associated Gene:

Gene:
INKA2
Ensembl Gene ID:
ENSAPLG00000013825
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014393
4732667 - 4735156
2490