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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4735059_4735109_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4735059 - 4735109
Intron Length:
51

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAGCATCA
5'SS Class:
major
3'SS Sequence:
CACGATACCATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACCCAA
U12 Branch Point Sequence:
AAACCCAAAACT
Flanking Amino Acid:
SKVERCPKGEDYTQSGFDIN
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.2
56.6
42.1
Major BPS
48.6
-0
1.1
56.4
30.9
Major PPT
54.7
0.11
0.9
46.8
34.7
Minor 5ss
32
-2.1
4.2
48.1
47.6
Minor BPS
48.7
-0
1.9
67.64
42.1

Associated Gene:

Gene:
INKA2
Ensembl Gene ID:
ENSAPLG00000013825
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014393
4732667 - 4735156
2490