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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4761030_4762458_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4761030 - 4762458
Intron Length:
1429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTATGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTAGTTTTAACT
Flanking Amino Acid:
DPTIEDSYRKQVEVDCQQCM
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.1
0.86
0.8
84.8
28.9
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
72.5
0.78
1.3
83.9
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013698
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014276
4753647 - 4766111
12465