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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4805291_4805882_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4805291 - 4805882
Intron Length:
592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCTC
5'SS Class:
strong_major
3'SS Sequence:
CCTACTCACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TCCCATGTAACT
Flanking Amino Acid:
DRYLRVKLPTRYKATITKKR
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
66.7
0.38
0.9
57.9
37.4
Minor 5ss
37
-1.5
3.2
50.1
46.5
Minor BPS
46.8
-0.1
2.2
65.66
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013695
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014260
4804672 - 4806226
1555