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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4809099_4810065_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4809099 - 4810065
Intron Length:
967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TCTTCCTCAACA
Flanking Amino Acid:
DRYLRVKLPIRYKIITTERR
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
77.9
0.63
0.8
73.7
29.9
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
77.6
0.86
1.5
83.78
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013694
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014257
4808686 - 4810672
1987