Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4818001_4818584_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4818001 - 4818584

Intron Length:

584

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTTTTT

5'SS Class:

major

3'SS Sequence:

TTTCTTTTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTGAA

U12 Branch Point Sequence:

TTCTCCTGAAAG

Flanking Amino Acid:

NVVQSITPQQQKESIAKCIS

Intron Amino Acid Position:

230

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.2

0.69

80.9

34.2

Major BPS

69.6

0.49

59.5

Major PPT

95.4

1.02

0.5

91.9

18.9

Minor 5ss

45.1

-0.5

3.1

67.5

43.4

Minor BPS

0.33

1.7

69.82

Associated Gene:

Gene:

ATP5PB

Ensembl Gene ID:

ENSAPLG00000013428

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040769

4817038 - 4821548

4511

ENSAPLT00000014001

4817038 - 4821361

4324