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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4821100_4821192_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4821100 - 4821192
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TGCTGATGAACG
Flanking Amino Acid:
MLSRLVLSAAPALLRSLRP
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
68.7
38.1
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
80
0.68
0.7
73.6
24.6
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
45.6
-0.4
2.2
54.31
46.1

Associated Gene:

Gene:
ATP5PB
Ensembl Gene ID:
ENSAPLG00000013428
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014001
4817038 - 4821361
4324