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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4821872_4822003_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4821872 - 4822003
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGACCC
5'SS Class:
major
3'SS Sequence:
CTGTGCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTGTAC
U12 Branch Point Sequence:
CCCCCCTGTACC
Flanking Amino Acid:
DRGILVASDSGAVELWELDE
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
63.8
40.9
Major BPS
44.7
-0.3
1.3
40.7
39.7
Major PPT
68.2
0.41
0.9
58.4
38.4
Minor 5ss
33.7
-1.9
3.1
45.2
42.3
Minor BPS
47
-0.2
1.8
52.74
44.6

Associated Gene:

Gene:
WDR77
Ensembl Gene ID:
ENSAPLG00000013403
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013964
4820649 - 4825179
4531