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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4822146_4822223_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4822146 - 4822223
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCGTCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CGGGCTCTGACC
Flanking Amino Acid:
TQAVSGGQDFCVKVWDLPQQ
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
74.2
0.54
0.8
68.4
31.8
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
45.6
-0.3
1.7
50.43
40.9

Associated Gene:

Gene:
WDR77
Ensembl Gene ID:
ENSAPLG00000013403
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013964
4820649 - 4825179
4531