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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4822990_4823356_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4822990 - 4823356
Intron Length:
367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTGAATTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTTGCTTTGAAT
Flanking Amino Acid:
KDTVFLSCAEDGRTLLWDTR
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
72
39.3
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
76.4
0.59
0.9
69.9
40.3
Minor 5ss
33.7
-1.9
3.5
47
48.3
Minor BPS
67
0.62
1.5
83.91
37.2

Associated Gene:

Gene:
WDR77
Ensembl Gene ID:
ENSAPLG00000013403
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013964
4820649 - 4825179
4531