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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4823412_4823710_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4823412 - 4823710
Intron Length:
299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CCTTAACTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
CCCTCCTTAACT
Flanking Amino Acid:
TRCPKPATRIVCSACNYLPT
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.7
32.9
Major BPS
72.8
0.57
1
81
30.3
Major PPT
76.9
0.61
0.9
69
35.8
Minor 5ss
53.6
0.12
2.3
66.5
39.1
Minor BPS
80
1.03
1.2
83.36
44

Associated Gene:

Gene:
WDR77
Ensembl Gene ID:
ENSAPLG00000013403
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013964
4820649 - 4825179
4531