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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4823783_4823877_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4823783 - 4823877
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAC
U12 Branch Point Sequence:
TCTCTTTTAAAG
Flanking Amino Acid:
HPQKSDIFALGDENGTVALV
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.5
40.6
Major BPS
70.1
0.5
1
70.3
31.9
Major PPT
80
0.68
1
81.7
27.6
Minor 5ss
34.8
-1.7
3
41.4
44.7
Minor BPS
58.8
0.14
1.5
61.29
40.8

Associated Gene:

Gene:
WDR77
Ensembl Gene ID:
ENSAPLG00000013403
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013964
4820649 - 4825179
4531