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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4823987_4824429_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4823987 - 4824429
Intron Length:
443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTATCCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TCATCTCTATCC
Flanking Amino Acid:
RITGFAFSTHSSPLLASISE
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
71.4
37.4
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
74.5
0.55
0.8
66.1
35.6
Minor 5ss
30.8
-2.2
3.8
47.7
48
Minor BPS
49.7
-0
1.9
63.61
42

Associated Gene:

Gene:
WDR77
Ensembl Gene ID:
ENSAPLG00000013403
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013964
4820649 - 4825179
4531