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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4857440_4859140_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4857440 - 4859140
Intron Length:
1701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
AGCTTCTCACCT
Flanking Amino Acid:
QMFETFDFNKDGYIDFMEYV
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
85
0.87
0.8
85.6
23
Major PPT
83.7
0.76
0.8
80.6
31.5
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
49.5
0.04
1.8
66.81
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031133
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019770
4857242 - 4861819
4578