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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4859956_4860263_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4859956 - 4860263
Intron Length:
308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGAAC
5'SS Class:
major
3'SS Sequence:
CGTATTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CTTTTCTGACCG
Flanking Amino Acid:
VFDKIDINGDGELSLEEFME
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
0.9
70.9
34.5
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
82.2
0.73
0.9
76.4
37.5
Minor 5ss
27.3
-2.6
3
30.7
36.9
Minor BPS
53.8
-0
1.9
63.41
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031133
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019770
4857242 - 4861819
4578