About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4866892_4868006_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4866892 - 4868006
Intron Length:
1115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
ATCTTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTTTTCTAACA
Flanking Amino Acid:
DKPELLEIVESIYKLKKVCR
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.8
38.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
87.1
0.83
0.7
84.9
29.2
Minor 5ss
35.1
-1.7
2.7
42.5
44.3
Minor BPS
70.7
0.64
1.6
83.44
30.4

Associated Gene:

Gene:
GUCA1B
Ensembl Gene ID:
ENSAPLG00000028513
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023640
4864004 - 4869429
5426