About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4868157_4869001_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4868157 - 4869001
Intron Length:
845

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
TCATTCAGATCC
Flanking Amino Acid:
NMFRAFDKNGDNTIDFLEYV
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
76.2
39.9
Major BPS
74.1
0.6
1
69
38.9
Major PPT
86.6
0.82
0.7
84.6
30.3
Minor 5ss
35.6
-1.6
2.7
37.6
40
Minor BPS
45
-0.4
1.9
56.7
41.5

Associated Gene:

Gene:
GUCA1B
Ensembl Gene ID:
ENSAPLG00000028513
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023640
4864004 - 4869429
5426