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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4877483_4878154_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4877483 - 4878154
Intron Length:
672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
ACTTTGTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGAGCAT
U12 Branch Point Sequence:
GAGGGCTGGACT
Flanking Amino Acid:
QHEEENTIFKAWAVETGKYQ
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.1
37.5
Major BPS
49.2
-0
1.5
59.7
46.7
Major PPT
74.5
0.55
0.9
65.7
40.4
Minor 5ss
23.1
-3.1
3.2
27.7
44.2
Minor BPS
44.3
-0.3
2
57.26
45.3

Associated Gene:

Gene:
IRF6
Ensembl Gene ID:
ENSAPLG00000009319
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042821
4873965 - 4881088
7124
ENSAPLT00000037594
4873965 - 4881088
7124
ENSAPLT00000009705
4873398 - 4881088
7691