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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4878360_4878809_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4878360 - 4878809
Intron Length:
450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
AATTGTCTACCT
Flanking Amino Acid:
PQSQGSIINPGSTGSAPWDE
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.9
33.4
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
82
0.72
0.9
76.2
37.8
Minor 5ss
25
-2.9
3.3
32.7
42.5
Minor BPS
45.4
-0.2
2.2
67.95
42.9

Associated Gene:

Gene:
IRF6
Ensembl Gene ID:
ENSAPLG00000009319
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042821
4873965 - 4881088
7124
ENSAPLT00000037594
4873965 - 4881088
7124
ENSAPLT00000009705
4873398 - 4881088
7691