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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4879185_4879490_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4879185 - 4879490
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTTTA
5'SS Class:
major
3'SS Sequence:
GTTTCTCTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
ATCCTACTGACA
Flanking Amino Acid:
SPELWISSLPMTDLEIKFEY
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
0.9
79.5
29.4
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
83.2
0.75
0.8
81
31
Minor 5ss
55.6
0.19
2.3
66.5
39
Minor BPS
44.4
-0.4
1.8
55.82
36.4

Associated Gene:

Gene:
IRF6
Ensembl Gene ID:
ENSAPLG00000009319
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042821
4873965 - 4881088
7124
ENSAPLT00000037594
4873965 - 4881088
7124
ENSAPLT00000009705
4873398 - 4881088
7691