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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4883493_4885070_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4883493 - 4885070
Intron Length:
1578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTAAT
U12 Branch Point Sequence:
TTCCTGGTAATG
Flanking Amino Acid:
TSQLTAKENERQRGNWLPLL
Intron Amino Acid Position:
548

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
74.7
37
Major BPS
69.2
0.48
1.3
69.7
44.2
Major PPT
89
0.88
0.6
84.1
23.9
Minor 5ss
26.2
-2.7
2.9
29.6
43.4
Minor BPS
41.6
-0.7
2.5
51.4
43.9

Associated Gene:

Gene:
TRAF3IP3
Ensembl Gene ID:
ENSAPLG00000009312
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009692
4883238 - 4894392
11155