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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4887019_4887529_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4887019 - 4887529
Intron Length:
511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CCACTTCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
CGGTCCCCACTT
Flanking Amino Acid:
QAEQQLQNSQRCLEVTREDL
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
70.1
0.45
0.8
61.4
34.8
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
42.7
-0.4
2
57.37
45.5

Associated Gene:

Gene:
TRAF3IP3
Ensembl Gene ID:
ENSAPLG00000009312
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048013
4883239 - 4896297
13059
ENSAPLT00000032852
4883239 - 4894392
11154
ENSAPLT00000009692
4883238 - 4894392
11155