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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4891922_4892172_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4891922 - 4892172
Intron Length:
251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGAAAT
U12 Branch Point Sequence:
ATGGACTGAAAT
Flanking Amino Acid:
TDCGTAVLNKEIIQLSSYLK
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
54.8
0.12
1.3
62.7
40.5
Major PPT
85.8
0.81
0.7
77.3
31.4
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
47.9
-0
1.8
65.86
44

Associated Gene:

Gene:
TRAF3IP3
Ensembl Gene ID:
ENSAPLG00000009312
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032852
4883239 - 4894392
11154
ENSAPLT00000009692
4883238 - 4894392
11155
ENSAPLT00000048013
4883239 - 4896297
13059