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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4893037_4893849_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4893037 - 4893849
Intron Length:
813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGCCA
5'SS Class:
major
3'SS Sequence:
CCTTTTGTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
AGATCCTGACAC
Flanking Amino Acid:
PAPSPPGLLQRPWSHPAYPP
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.2
63.2
42.9
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
83.8
0.76
0.8
75.9
38
Minor 5ss
36.6
-1.5
3.3
48.7
47
Minor BPS
47.8
-0.1
1.8
57.26
40.4

Associated Gene:

Gene:
TRAF3IP3
Ensembl Gene ID:
ENSAPLG00000009312
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048013
4883239 - 4896297
13059
ENSAPLT00000032852
4883239 - 4894392
11154
ENSAPLT00000009692
4883238 - 4894392
11155