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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4894142_4896163_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
4894142 - 4896163
Intron Length:
2022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGGTTTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACTCAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
83.1
30.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75.6
0.58
1.1
72.9
42.2
Minor 5ss
31.5
-2.1
2.7
34
41.5
Minor BPS
57.7
0.32
1.9
80.91
39.8

Associated Gene:

Gene:
TRAF3IP3
Ensembl Gene ID:
ENSAPLG00000009312
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048013
4883239 - 4896297
13059