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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4898691_4898968_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4898691 - 4898968
Intron Length:
278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCACA
5'SS Class:
major
3'SS Sequence:
GCCTTTGCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
CACACGTGAACA
Flanking Amino Acid:
GNIVVVSSVAGKAPGPFAAP
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
67.6
39.4
Major BPS
71.2
0.53
1
61
37.5
Major PPT
69.5
0.44
0.9
60.8
40.3
Minor 5ss
32.8
-2
3.1
40.2
45.7
Minor BPS
45.3
-0.3
2.2
54.04
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011838
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029057
4895771 - 4900330
4560
ENSAPLT00000036587
4896541 - 4900330
3790
ENSAPLT00000020521
4897888 - 4900330
2443
ENSAPLT00000034613
4893733 - 4900330
6598
ENSAPLT00000012310
4896741 - 4900330
3590
ENSAPLT00000031769
4897888 - 4900330
2443
ENSAPLT00000012031
4896244 - 4900766
4523
ENSAPLT00000030309
4897019 - 4900330
3312
ENSAPLT00000048068
4895657 - 4900330
4674